Cheap flights from MSO to SAN (Missoula Intl. to San Diego Intl.)

Earn rewards on top of your airline miles with Orbitz Rewards

Many airlines offer flexible change policies

Sign up to receive text alerts about your trip

Cheap Flights from MSO to SAN starting at $102 One Way, $235 Round Trip

Prices starting at $235 for return flights and $102 for one-way flights to San Diego Intl. were the cheapest prices found within the past 7 days, for the period specified. Prices and availability are subject to change. Additional terms apply.

Fri, May 30 - Tue, Jun 3
MSO
Missoula
SAN
San Diego
$235 Roundtrip, found 2 days ago
$235
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Fri, May 30 from Missoula to San Diego, returning Tue, Jun 3, priced at $235 found 2 days ago
Fri, May 30 - Tue, Jun 3
MSO
Missoula
SAN
San Diego
$236 Roundtrip, found 2 days ago
$236
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Fri, May 30 from Missoula to San Diego, returning Tue, Jun 3, priced at $236 found 2 days ago
Fri, May 30 - Tue, Jun 3
MSO
Missoula
SAN
San Diego
$242 Roundtrip, found 2 days ago
$242
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Fri, May 30 from Missoula to San Diego, returning Tue, Jun 3, priced at $242 found 2 days ago
Mon, Jun 2 - Tue, Jun 10
MSO
Missoula
SAN
San Diego
$246 Roundtrip, found 2 days ago
$246
Roundtrip
found 2 days ago
Select Frontier Airlines flight, departing Mon, Jun 2 from Missoula to San Diego, returning Tue, Jun 10, priced at $246 found 2 days ago
Tue, Jun 3 - Tue, Jun 10
MSO
Missoula
SAN
San Diego
$259 Roundtrip, found 18 hours ago
$259
Roundtrip
found 18 hours ago
Select Alaska Airlines flight, departing Tue, Jun 3 from Missoula to San Diego, returning Tue, Jun 10, priced at $259 found 18 hours ago

Hotel Ideas near San Diego Intl.

Airport Hotels near San Diego Intl.

Sheraton San Diego Resort
Sheraton San Diego Resort
4 out of 5
1380 Harbor Island Dr, San Diego, CA
The price is $235 per night from May 12 to May 13
$235
includes taxes & fees
$204 per night
May 12 - May 13
Book a stay at this business-friendly hotel in San Diego. Enjoy 3 outdoor pools, 5 restaurants, and a marina. Our guests praise the pool and the restaurant in ...
8/10 Very Good! (2,615 reviews)
"No view"

Reviewed on Apr 28, 2025

Sheraton San Diego Resort
Wyndham San Diego Bayside
Wyndham San Diego Bayside
4 out of 5
1355 N Harbor Drive, San Diego, CA
The price is $176 per night from May 11 to May 12
$176
includes taxes & fees
$152 per night
May 11 - May 12
Stay at this 4-star business-friendly hotel in San Diego. Enjoy free WiFi, 2 restaurants, and breakfast (surcharge). Our guests praise the pool and the restaurant ...
8.2/10 Very Good! (5,666 reviews)
"We arrived in San Diego via cruise ship and choose the Wyndam because of it's proximity to the cruise port. A short (under 5 mins) walk got us to our destination. There is a lot to do in the area and also plenty of dining options. The hotel is very nice, the staff members that we spoke with were ..."

Reviewed on Apr 28, 2025

Wyndham San Diego Bayside
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 out of 5
2485 Hotel Circle Place, San Diego, CA
The price is $152 per night from May 7 to May 8
$152
includes taxes & fees
$132 per night
May 7 - May 8
Book a stay at this business-friendly hotel in San Diego. Enjoy free breakfast, free WiFi, and a fitness center. Our guests praise the breakfast and the helpful ...
7.8/10 Good! (1,550 reviews)
"Enjoyed our stay and will stay again"

Reviewed on Apr 28, 2025

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Hotels In San Diego

San Diego Mission Bay Resort
San Diego Mission Bay Resort
4 out of 5
1775 E Mission Bay Dr, San Diego, CA
The price is $285 per night from May 11 to May 12
$285
includes taxes & fees
$248 per night
May 11 - May 12
Book a stay at this beach hotel in San Diego. Enjoy free WiFi, a full-service spa, and 2 restaurants. Our guests praise the pool and the helpful staff in our ...
8.2/10 Very Good! (1,191 reviews)
"Family friendly ❤️"

Reviewed on Apr 29, 2025

San Diego Mission Bay Resort
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 out of 5
2485 Hotel Circle Place, San Diego, CA
The price is $152 per night from May 7 to May 8
$152
includes taxes & fees
$132 per night
May 7 - May 8
Book a stay at this business-friendly hotel in San Diego. Enjoy free breakfast, free WiFi, and a fitness center. Our guests praise the breakfast and the helpful ...
7.8/10 Good! (1,550 reviews)
"Enjoyed our stay and will stay again"

Reviewed on Apr 28, 2025

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
Wyndham San Diego Bayside
Wyndham San Diego Bayside
4 out of 5
1355 N Harbor Drive, San Diego, CA
The price is $176 per night from May 11 to May 12
$176
includes taxes & fees
$152 per night
May 11 - May 12
Stay at this 4-star business-friendly hotel in San Diego. Enjoy free WiFi, 2 restaurants, and breakfast (surcharge). Our guests praise the pool and the restaurant ...
8.2/10 Very Good! (5,666 reviews)
"We arrived in San Diego via cruise ship and choose the Wyndam because of it's proximity to the cruise port. A short (under 5 mins) walk got us to our destination. There is a lot to do in the area and also plenty of dining options. The hotel is very nice, the staff members that we spoke with were ..."

Reviewed on Apr 28, 2025

Wyndham San Diego Bayside
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

San Diego Hotels With Airport Transportation

Wyndham San Diego Bayside
Wyndham San Diego Bayside
4 out of 5
1355 N Harbor Drive, San Diego, CA
The price is $176 per night from May 11 to May 12
$176
includes taxes & fees
$152 per night
May 11 - May 12
Stay at this 4-star business-friendly hotel in San Diego. Enjoy free WiFi, 2 restaurants, and breakfast (surcharge). Our guests praise the pool and the restaurant ...
8.2/10 Very Good! (5,666 reviews)
"We arrived in San Diego via cruise ship and choose the Wyndam because of it's proximity to the cruise port. A short (under 5 mins) walk got us to our destination. There is a lot to do in the area and also plenty of dining options. The hotel is very nice, the staff members that we spoke with were ..."

Reviewed on Apr 28, 2025

Wyndham San Diego Bayside
Sheraton San Diego Resort
Sheraton San Diego Resort
4 out of 5
1380 Harbor Island Dr, San Diego, CA
The price is $235 per night from May 12 to May 13
$235
includes taxes & fees
$204 per night
May 12 - May 13
Book a stay at this business-friendly hotel in San Diego. Enjoy 3 outdoor pools, 5 restaurants, and a marina. Our guests praise the pool and the restaurant in ...
8/10 Very Good! (2,615 reviews)
"No view"

Reviewed on Apr 28, 2025

Sheraton San Diego Resort
Holiday Inn Express San Diego Airport - Old Town by IHG
Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 out of 5
1955 San Diego Ave, San Diego, CA
The price is $176 per night from May 5 to May 6
$176
includes taxes & fees
$153 per night
May 5 - May 6
Book a stay at this business-friendly hotel in San Diego. Enjoy free breakfast, free WiFi, and a free airport shuttle. Our guests praise the breakfast and the ...
8.8/10 Excellent! (1,003 reviews)
"Very comfortable and convenient location. Super friendly staff."

Reviewed on Apr 28, 2025

Holiday Inn Express San Diego Airport - Old Town by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Low Priced San Diego Hotels

Pleasant Inn
Pleasant Inn
2.5 out of 5
5550 Clairemont Mesa Blvd, San Diego, CA
The price is $114 per night from May 6 to May 7
$114
includes taxes & fees
$99 per night
May 6 - May 7
Stay at this hotel in San Diego. Enjoy free WiFi, free parking, and a 24-hour front desk. Our guests praise the helpful staff and the convenient parking in our ...
8.4/10 Very Good! (1,008 reviews)
"It would’ve been nice to offer at least a continental breakfast. Also a pool or hot tub would be nice here"

Reviewed on Apr 27, 2025

Pleasant Inn
E-Z 8 Motel Old Town
E-Z 8 Motel Old Town
2.5 out of 5
4747 Pacific Highway, San Diego, CA
The price is $90 per night from May 4 to May 5
$90
includes taxes & fees
$78 per night
May 4 - May 5
Book a stay at this business-friendly hotel in San Diego. Enjoy free parking, WiFi (surcharge), and a 24-hour front desk. Our guests praise the helpful staff ...
6.2/10 (2,023 reviews)
"N/A"

Reviewed on Apr 29, 2025

E-Z 8 Motel Old Town
Kings Inn San Diego
Kings Inn San Diego
2.5 out of 5
1333 Hotel Cir S, San Diego, CA
The price is $116 per night from May 6 to May 7
$116
includes taxes & fees
$102 per night
May 6 - May 7
Stay at this hotel in San Diego. Enjoy free WiFi, 2 restaurants, and breakfast (surcharge). Our guests praise the breakfast and the pool in our reviews. Popular ...
8.6/10 Excellent! (3,212 reviews)
"Clean basic no-frills hotel room in a convenient location at a reasonable price. Restaurant on-location. Would stay again."

Reviewed on Apr 30, 2025

Kings Inn San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Family Friendly Hotels in San Diego

Bahia Resort Hotel
Bahia Resort Hotel
3.5 out of 5
998 W Mission Bay Dr, San Diego, CA
The price is $274 per night from May 7 to May 8
$274
includes taxes & fees
$238 per night
May 7 - May 8
Book a stay at this beach resort in San Diego. Enjoy free parking, a beach locale, and breakfast (surcharge). Our guests praise the pool and the restaurant in ...
8.4/10 Very Good! (1,520 reviews)
"Bayfront means bottom in front of beach . Bayview means just some sort of room with some what of a water view pictures are not accurate"

Reviewed on Apr 29, 2025

Bahia Resort Hotel
The Dana on Mission Bay
The Dana on Mission Bay
3.5 out of 5
1710 W Mission Bay Dr, San Diego, CA
The price is $194 per night from May 11 to May 12
$194
includes taxes & fees
$169 per night
May 11 - May 12
Stay at this 3.5-star business-friendly hotel in San Diego. Enjoy 2 outdoor pools, a marina, and 2 hot tubs. Our guests praise the pool and the restaurant in ...
8.8/10 Excellent! (3,336 reviews)
"Clean and very nice! Pool area is also beautiful."

Reviewed on Apr 29, 2025

The Dana on Mission Bay
Catamaran Resort and Spa
Catamaran Resort and Spa
4 out of 5
3999 Mission Boulevard, San Diego, CA
The price is $284 per night from May 7 to May 8
$284
includes taxes & fees
$247 per night
May 7 - May 8
Book a stay at this beach resort in San Diego. Enjoy free WiFi, a full-service spa, and a beach locale. Our guests praise the helpful staff and the clean rooms ...
8/10 Very Good! (1,002 reviews)

Families like: Outdoor pool, game room, on the beach, bicycle rentals

Travelers say...
"The view from the Tower (Bay View) was incredible. The room was clean and we loved sitting out on the balcony, set with a bistro sized table and two chairs. The view is a big plus. That being said, the room and tower in general need some updating. The decor is kinda 90’s tropical. Outdated. I didn’t ..."

Reviewed on Apr 29, 2025

Catamaran Resort and Spa
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

MSO to SAN Route Info

Origin Airport
Destination Airport
Number Of Airlines Serving
Distance
Shortest Flight Departure Time
Shortest Flight Departure Date
MSO Address & GPS
Address:
5225 Highway 10 West
Missoula MT, 59802
United States
IATA Code:
MSO
Longitude:
-114.083216
Latitude:
46.918965
Time Zone:
America/Denver
SAN Address & GPS
Address:
Airport Drive
San Diego CA, 92101
United States
IATA Code:
SAN
Longitude:
-117.197312
Latitude:
32.731938
Time Zone:
America/Los_Angeles

Frequently asked questions

Am I able to catch a flight from Missoula, MT Airport (MSO-Missoula Intl.) to San Diego, CA Airport (SAN-San Diego Intl.) now?
Head to the Covid-19 Travel Advisor for the most up-to-date information on travel restrictions and quarantine when catching a flight from Missoula, MT Airport (MSO-Missoula Intl.) to San Diego, CA Airport (SAN-San Diego Intl.).
Are there non-stop flights from Missoula, MT Airport (MSO-Missoula Intl.) to San Diego Airport?
There aren’t any direct flights on this route. But United Airlines, Alaska Airlines and American Airlines can fly you from Missoula, MT Airport (MSO-Missoula Intl.) to San Diego Intl. Airport (SAN) with just one stopover.
What is the shortest flight from MSO to San Diego Airport?
Make the most of the opportunity to relax on your flight from Clinton to Leucadia. The quickest flight time from Missoula, MT Airport (MSO-Missoula Intl.) to San Diego, CA Airport (SAN-San Diego Intl.) is 5 hours and 4 minutes, which gives you loads of time to enjoy a wine or get absorbed in a good book.
How many hours flight from Missoula Intl. Airport (MSO) to SAN?
The flight from Missoula Intl. Airport (MSO) to San Diego Airport will take an average of 5 hours and 10 minutes. A few movies, some journaling and a bit of shut-eye will help make time zoom by.
If I am not able to travel due to COVID-19, can I cancel my flight to San Diego, CA Airport (SAN-San Diego Intl.)?
We get that traveling right now has its challenges, so it’s good to know that many reservations booked through us are able to be cancelled or changed. If your travel plans to San Diego, CA Airport (SAN-San Diego Intl.) have been affected by COVID-19, a lot of airlines are making things easier by offering credits to use at a later date. Just sign in to your account and you’ll quickly see what options are available. Our Customer Service Portal is the place to go for more information.
Are there flights to San Diego, CA Airport (SAN-San Diego Intl.) with flexible change policies?
In most cases you’ll have the option to reschedule your flight to San Diego, CA Airport (SAN-San Diego Intl.) without a change fee. All you have to do then is pay the difference between the old flight and the new one. Look for the “no change fees” filter and book with confidence.
What airlines have the most flights from MSO to San Diego Airport?
Currently, no airlines have direct flights from Missoula, MT Airport (MSO-Missoula Intl.) to San Diego, CA Airport (SAN-San Diego Intl.). But there’s a silver lining. There are numerous single or multi-stop options available.

Map To Nearby Hotels

Fare, taxes & fees: Fares include all taxes and fees, except baggage fees. Rates shown reflect fares found by other Orbitz users over the past 7 days. Due to rapidly changing airline prices & seat availability, these fares may no longer be available.

Refunds/changes/cancellations: Itinerary changes, if permitted for the fare, will have a $30 service fee charged by Orbitz. Additional airline charges may apply.

Other conditions: Schedules, fares and rules are subject to change without notice. Seats are limited and may not be available on all flights/dates or in all markets. Lower fares may be available. Fares will not be honored retroactively or in exchange for any wholly/partially unused ticket. Tickets are non-transferable and non-refundable. Fare rules are provided for the selected itinerary before booking.