$541 Cheap flight deals from San Juan (SJU) to Tokyo (TYO)

Earn rewards on top of your airline miles with Orbitz Rewards

Many airlines offer flexible change policies

Sign up to receive text alerts about your trip

This Weekend's Flight Deals from San Juan to Tokyo

This weekend's flight prices found within the past 7 days, for the period specified. Prices and availability are subject to change. Additional terms apply.

Fri, Aug 7 - Thu, Aug 13
SJU
Luis Munoz Marin Intl.
HND
Haneda
$2,150 Roundtrip, found 5 hours ago
$2,150
Roundtrip
found 5 hours ago
Select JetBlue Airways flight, departing Fri, Aug 7 from Luis Munoz Marin Intl. to Haneda, returning Thu, Aug 13, priced at $2,150 found 5 hours ago
Fri, Aug 7 - Thu, Aug 13
SJU
Luis Munoz Marin Intl.
NRT
Narita Intl.
$2,628 Roundtrip, found 5 hours ago
$2,628
Roundtrip
found 5 hours ago
Select JetBlue Airways flight, departing Fri, Aug 7 from Luis Munoz Marin Intl. to Narita Intl., returning Thu, Aug 13, priced at $2,628 found 5 hours ago

Airfares from $541 One Way, $1,050 Round Trip from San Juan to Tokyo

Prices starting at $1,050 for return flights and $541 for one-way flights to Tokyo were the cheapest prices found within the past 7 days, for the period specified. Prices and availability are subject to change. Additional terms apply.

Wed, Sep 9 - Wed, Sep 16
SJU
San Juan
NRT
Tokyo
$1,050 Roundtrip, found 5 days ago
$1,050
Roundtrip
found 5 days ago
Select Air Canada flight, departing Wed, Sep 9 from San Juan to Tokyo, returning Wed, Sep 16, priced at $1,050 found 5 days ago
Mon, Sep 14 - Mon, Sep 21
SJU
San Juan
HND
Tokyo
$1,158 Roundtrip, found 2 days ago
$1,158
Roundtrip
found 2 days ago
Select Air Canada flight, departing Mon, Sep 14 from San Juan to Tokyo, returning Mon, Sep 21, priced at $1,158 found 2 days ago
Wed, Sep 2 - Wed, Sep 9
SJU
San Juan
NRT
Tokyo
$1,274 Roundtrip, found 1 day ago
$1,274
Roundtrip
found 1 day ago
Select United flight, departing Wed, Sep 2 from San Juan to Tokyo, returning Wed, Sep 9, priced at $1,274 found 1 day ago
Wed, Sep 2 - Wed, Sep 9
SJU
San Juan
NRT
Tokyo
$1,279 Roundtrip, found 1 day ago
$1,279
Roundtrip
found 1 day ago
Select American Airlines flight, departing Wed, Sep 2 from San Juan to Tokyo, returning Wed, Sep 9, priced at $1,279 found 1 day ago
Sat, Aug 15 - Sat, Aug 29
SJU
San Juan
HND
Tokyo
$1,309 Roundtrip, found 3 days ago
$1,309
Roundtrip
found 3 days ago
Select Delta flight, departing Sat, Aug 15 from San Juan to Tokyo, returning Sat, Aug 29, priced at $1,309 found 3 days ago

Tokyo economy flight packages

Price found within the past 48 hours. Click for updated prices.
Hotel Rose Garden Shinjuku
3.0-star property

Hotel Rose Garden Shinjuku

8.8/10 Excellent! (1,000 reviews)

Sep 10 - Sep 16

6 night stay

San Juan (SJU) to Tokyo (HND)

Air Canada • Roundtrip • Coach
Price was $2,035, price is now $1,388 per person
$1,388
per person
found 20 hours ago
Excellent place, great location and perfect service

Reviewed on Aug 2, 2026

Hotel Niwa Tokyo
4.0-star property

Hotel Niwa Tokyo

9.6/10 Exceptional! (2,387 reviews)

Sep 10 - Sep 16

6 night stay

San Juan (SJU) to Tokyo (HND)

Air Canada • Roundtrip • Coach
Price was $2,133, price is now $1,534 per person
$1,534
per person
found 20 hours ago

Premium Apart MONday HAMAMATSUCHO Station
4.0-star property

Premium Apart MONday HAMAMATSUCHO Station

9.6/10 Exceptional! (37 reviews)

Sep 14 - Sep 20

6 night stay

San Juan (SJU) to Tokyo (HND)

Air Canada • Roundtrip • Coach
Save 100% on your flight
Price was $2,745, price is now $1,577 per person
$1,577
per person
found 1 day ago
New property (opened in March 2026). Good location and staffs are friendly. In-room laundry is the best.

Reviewed on Aug 2, 2026

Don't see what you're looking for?
See all available trips from San Juan to Tokyo
View all trips

More About Flying To Tokyo from San Juan

Route Information for Flights from San Juan to Tokyo

Origin Airport IATA Code
SJU
Destination Airport IATA Code
TYO
Distance
Direct Flight Airlines
Earliest Flight Arrival
Latest Flight Arrival

San Juan to Tokyo

Low Cost Flights From San Juan to Tokyo

Tired of the endless online search for the cheapest flights from San Juan to Tokyo? Save the energy for your vacation by using Orbitz to plan your next air trip. Orbitz guarantees the lowest prices on San Juan to Tokyo flights, and our cutting-edge mobile tools mean you can search and book flights with your iPhone, Android phone, iPad, or tablet.

Book Discount San Juan to Tokyo Flights With Ease

Take advantage of amazing sales on international and domestic fares, including bargain flights from San Juan to Tokyo. Not only do you find cheap deals on Orbitz, we make researching and planning your trip online and booking your tickets a breeze. Our discount San Juan to Tokyo flights keep more money in your pocket for your travel adventures.

Plan Flights From San Juan to Tokyo Anywhere, Anytime

Planning your vacation has never been easier using the convenient Orbitz apps available for most mobile devices. If there are any changes or delays for San Juan to Tokyo flights, Orbitz customers receive instant free alerts via email or mobile phone text message. Change or cancel flights from San Juan to Tokyo anytime online or by calling our Customer Service representatives.

Frequent Flyer? Earn Miles and Points Through Orbitz!

Earn points or miles on your low fare San Juan to Tokyo flights with Orbitz, just as you would by booking directly with the airline. Be sure to include your frequent flyer details when you book qualifying flights from San Juan to Tokyo on the Orbitz website.

Frequently asked questions

What is the shortest flight from San Juan to Tokyo?
With a minimum flight time of 17 hours and 26 minutes, it's a wise idea to be as comfortable as possible. Built up some nice air points? This might be a good opportunity to upgrade to a seat with more legroom on your San Juan to Tokyo journey.
What is the cheapest day of the week to fly?
Consider flying out early in the week to save on your airfare. Orbitz data from 2021 shows that Monday is the cheapest day to depart, followed by Tuesday. Saturday showed the highest average ticket prices likely because many travelers prefer to start their vacation on a weekend.
What is the cheapest month to fly?
We won't keep you guessing, according to Orbitz data from 2021, the cheapest month to fly is February. Perfect for those who need a weekend getaway, or just a break from it all in the shortest month of the year. Be aware that the most expensive time to fly is during the height of summer in July, and in the holiday month of December.*According to flight demand on Orbitz.com from January to December 2021. Savings are subject to change based on departure location, date and destination.

More Destinations

Fare, taxes & fees: Fares include all taxes and fees, except baggage fees. Rates shown reflect fares found by other Orbitz users over the past 7 days. Due to rapidly changing airline prices & seat availability, these fares may no longer be available.

Refunds/changes/cancellations: Itinerary changes, if permitted for the fare, will have a $30 service fee charged by Orbitz. Additional airline charges may apply.

Other conditions: Schedules, fares and rules are subject to change without notice. Seats are limited and may not be available on all flights/dates or in all markets. Lower fares may be available. Fares will not be honored retroactively or in exchange for any wholly/partially unused ticket. Tickets are non-transferable and non-refundable. Fare rules are provided for the selected itinerary before booking.