$644 Cheap flight deals from San Juan (SJU) to Tokyo (TYO)

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This Weekend's Flight Deals from San Juan to Tokyo

This weekend's flight prices found within the past 7 days, for the period specified. Prices and availability are subject to change. Additional terms apply.

Fri, Jul 24 - Sun, Jul 26
SJU
Luis Munoz Marin Intl.
HND
Haneda
$2,550 Roundtrip, found 1 day ago
$2,550
Roundtrip
found 1 day ago
Select JetBlue Airways flight, departing Fri, Jul 24 from Luis Munoz Marin Intl. to Haneda, returning Sun, Jul 26, priced at $2,550 found 1 day ago
Fri, Jul 24 - Sun, Jul 26
SJU
Luis Munoz Marin Intl.
NRT
Narita Intl.
$2,933 Roundtrip, found 1 day ago
$2,933
Roundtrip
found 1 day ago
Select Air Canada flight, departing Fri, Jul 24 from Luis Munoz Marin Intl. to Narita Intl., returning Sun, Jul 26, priced at $2,933 found 1 day ago

Airfares from $644 One Way, $1,295 Round Trip from San Juan to Tokyo

Prices starting at $1,295 for return flights and $644 for one-way flights to Tokyo were the cheapest prices found within the past 7 days, for the period specified. Prices and availability are subject to change. Additional terms apply.

Tue, Sep 1 - Thu, Sep 10
SJU
San Juan
HND
Tokyo
$1,295 Roundtrip, found 23 hours ago
$1,295
Roundtrip
found 23 hours ago
Select American Airlines flight, departing Tue, Sep 1 from San Juan to Tokyo, returning Thu, Sep 10, priced at $1,295 found 23 hours ago
Sat, Feb 27 - Sun, Mar 7
SJU
San Juan
NRT
Tokyo
$1,348 Roundtrip, found 15 hours ago
$1,348
Roundtrip
found 15 hours ago
Select American Airlines flight, departing Sat, Feb 27 from San Juan to Tokyo, returning Sun, Mar 7, priced at $1,348 found 15 hours ago
Tue, Aug 25 - Wed, Sep 2
SJU
San Juan
NRT
Tokyo
$1,439 Roundtrip, found 3 hours ago
$1,439
Roundtrip
found 3 hours ago
Select Etihad Airways flight, departing Tue, Aug 25 from San Juan to Tokyo, returning Wed, Sep 2, priced at $1,439 found 3 hours ago
Wed, Sep 16 - Sun, Sep 27
SJU
San Juan
NRT
Tokyo
$1,466 Roundtrip, found 6 days ago
$1,466
Roundtrip
found 6 days ago
Select Air Canada flight, departing Wed, Sep 16 from San Juan to Tokyo, returning Sun, Sep 27, priced at $1,466 found 6 days ago
Wed, Oct 21 - Mon, Nov 9
SJU
San Juan
HND
Tokyo
$1,490 Roundtrip, found 2 days ago
$1,490
Roundtrip
found 2 days ago
Select Qatar Airways flight, departing Wed, Oct 21 from San Juan to Tokyo, returning Mon, Nov 9, priced at $1,490 found 2 days ago

Tokyo economy flight packages

Price found within the past 48 hours. Click for updated prices.
Premium hotel MONday MAIHAMA View I
4.0-star property

Premium hotel MONday MAIHAMA View I

9.2/10 Wonderful! (208 reviews)

Sep 9 - Sep 12

3 night stay

San Juan (SJU) to Tokyo (HND)

United • Roundtrip • Coach
Price was $2,434, price is now $2,166 per person
$2,166
per person
found 15 hours ago

Hotel Chinzanso Tokyo
5.0-star property

Hotel Chinzanso Tokyo

9.8/10 Exceptional! (1,115 reviews)

Sep 5 - Sep 7

2 night stay

San Juan (SJU) to Tokyo (HND)

United • Non-stop roundtrip • Coach
Price was $2,801, price is now $2,418 per person
$2,418
per person
found 14 hours ago
If you are looking for tranquility in the middle of a big city, this hotel is for you! The staff were so helpful and friendly and the gardens on the property were incredible. Beds are smaller and harder than expected but we made them work. The only other thing that I didn’t care for was having to pay to use the pool. That was strange…so we only went one time, which was a bummer.

Reviewed on Jul 11, 2026

The Prince Sakura Tower Tokyo, Autograph Collection
5.0-star property

The Prince Sakura Tower Tokyo, Autograph Collection

9.4/10 Exceptional! (1,001 reviews)

Sep 5 - Sep 7

2 night stay

San Juan (SJU) to Tokyo (HND)

United • Non-stop roundtrip • Coach
Price was $2,626, price is now $2,360 per person
$2,360
per person
found 14 hours ago
Great facilities, nice restaurants and bar, very clean and friendly staff

Reviewed on Jul 17, 2026

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More About Flying To Tokyo from San Juan

Route Information for Flights from San Juan to Tokyo

Origin Airport IATA Code
SJU
Destination Airport IATA Code
TYO
Distance
Direct Flight Airlines
Earliest Flight Arrival
Latest Flight Arrival

San Juan to Tokyo

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Frequently asked questions

What is the shortest flight from San Juan to Tokyo?
With a minimum flight time of 17 hours and 26 minutes, it's a wise idea to be as comfortable as possible. Built up some nice air points? This might be a good opportunity to upgrade to a seat with more legroom on your San Juan to Tokyo journey.
What is the cheapest day of the week to fly?
Consider flying out early in the week to save on your airfare. Orbitz data from 2021 shows that Monday is the cheapest day to depart, followed by Tuesday. Saturday showed the highest average ticket prices likely because many travelers prefer to start their vacation on a weekend.
What is the cheapest month to fly?
We won't keep you guessing, according to Orbitz data from 2021, the cheapest month to fly is February. Perfect for those who need a weekend getaway, or just a break from it all in the shortest month of the year. Be aware that the most expensive time to fly is during the height of summer in July, and in the holiday month of December.*According to flight demand on Orbitz.com from January to December 2021. Savings are subject to change based on departure location, date and destination.

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Fare, taxes & fees: Fares include all taxes and fees, except baggage fees. Rates shown reflect fares found by other Orbitz users over the past 7 days. Due to rapidly changing airline prices & seat availability, these fares may no longer be available.

Refunds/changes/cancellations: Itinerary changes, if permitted for the fare, will have a $30 service fee charged by Orbitz. Additional airline charges may apply.

Other conditions: Schedules, fares and rules are subject to change without notice. Seats are limited and may not be available on all flights/dates or in all markets. Lower fares may be available. Fares will not be honored retroactively or in exchange for any wholly/partially unused ticket. Tickets are non-transferable and non-refundable. Fare rules are provided for the selected itinerary before booking.